» A bioconductor package to find and visualize significantly enriched or depleted amino acid motif or amino acid group patterns in proteome dataset
(A collaboration with Dr. Acharya)
In addition to implement iceLogo in R to visualize differential amino acid sequence pattern, dagLogo can also test and visualize significant amino acid group patterns by classifying the amino acids into groups according to charge, chemistry and hydrophobicity and etc.
Ou J, Liu H, Nirala NK, Stukalov A, Acharya U, Green MR, et al. (2020) dagLogo: An R/Bioconductor package for identifying and visualizing differential amino acid group usage in proteomics data. PLoS ONE 15(11): e0242030. https://doi.org/10.1371/journal.pone.0242030